ICPC Data Set¶
About the International Cancer Proteogenome Consortium¶
The International Cancer Proteogenome Consortium (ICPC) is a voluntary scientific organization that provides a forum for collaboration among some of the world’s leading cancer and proteogenomic research centers. Launched in late 2016, the ICPC includes researchers from over a dozen countries sharing data and results of proteogenomic analysis.
About the International Cancer Proteogenome Consortium Data Set¶
ICPC has several studies available at the Proteomics Data Commons (PDC). ISB-CGC has procured data for the following studies through the PDC API:
Proteogenomics of Gastric Cancer
HBV-Related Hepatocellular Carcinima
Oral Squamous Cell Carcinoma Study
Academia Sinica LUAD100
Accessing the ICPC Data in Google BigQuery¶
ISB-CGC has ICPC clinical and protein expression data stored in Google BigQuery tables. Information about these tables can be found using the ISB-CGC BigQuery Table Search with ICPC selected for filter PROGRAM. To learn more about this tool, see the ISB-CGC BigQuery Table Search documentation.
The ICPC tables are in project isb-cgc-bq. To learn more about how to view and query tables in the Google BigQuery console, see the ISB-CGC BigQuery Tables documentation.
Data set
isb-cgc-bq.ICPCcontains the latest tables for each data type.Data set
isb-cgc-bq.ICPC_versionedcontains previously released tables, as well as the most current table.