ICPC Data Set

About the International Cancer Proteogenome Consortium

The International Cancer Proteogenome Consortium (ICPC) is a voluntary scientific organization that provides a forum for collaboration among some of the world’s leading cancer and proteogenomic research centers. Launched in late 2016, the ICPC includes researchers from over a dozen countries sharing data and results of proteogenomic analysis.

About the International Cancer Proteogenome Consortium Data Set

ICPC has several studies available at the Proteomics Data Commons (PDC). ISB-CGC has procured data for the following studies through the PDC API:

  • Proteogenomics of Gastric Cancer

  • HBV-Related Hepatocellular Carcinima

  • Oral Squamous Cell Carcinoma Study

  • Academia Sinica LUAD100

Accessing the ICPC Data in Google BigQuery

ISB-CGC has ICPC clinical and protein expression data stored in Google BigQuery tables. Information about these tables can be found using the ISB-CGC BigQuery Table Search with ICPC selected for filter PROGRAM. To learn more about this tool, see the ISB-CGC BigQuery Table Search documentation.

The ICPC tables are in project isb-cgc-bq. To learn more about how to view and query tables in the Google BigQuery console, see the ISB-CGC BigQuery Tables documentation.

  • Data set isb-cgc-bq.ICPC contains the latest tables for each data type.

  • Data set isb-cgc-bq.ICPC_versioned contains previously released tables, as well as the most current table.

Have feedback or corrections? Please email us at feedback@isb-cgc.org. Follow us on BlueSky and X!